523 results

SCRC: PhD: Profiling host-parasite dynamics of AGD using molecular DNA methods – application to vaccine development, selective breeding and offshore aquaculture

Project number: 2009-757
Project Status:
Completed
Budget expenditure: $0.00
Principal Investigator: James O. Harris
Organisation: Flinders University
Project start/end date: 28 Feb 2010 - 31 May 2013
Contact:
FRDC

Need

Amoebic gill disease (AGD) research remains a high priority for the Tasmanian salmon industry. Within this framework there is a need to develop, both for research and practical reasons, non-destructive quantitative measures of AGD severity. This PhD project will develop a state of the art quantitative real time PCR (qRT-PCR) method for AGD-causing Neoparamoeba perurans. If successful this will be the first such DNA test of its type in the world for this disease. The assay will then be utilised to answer practical questions such as profiling host-parasite dynamics in vaccinated and non-vaccinated salmon prior to, during and after commercial freshwater bathing treatment, providing a rigorous measure of vaccine efficacy, and much-needed insights into the parasite loading exhibited by the different experimental salmon groups. The N. perurans DNA test will then be extended to selectively-bred salmon, correlating pathogen load with breeding values for resistance in F2 stock. This could provide a more reliable way of quantifying infection than current gill scoring methods, and will be the first time such a tool is applied to gain more precise information from a commercial salmon selective breeding program. Finally, the project will then apply the qRT-PCR test and other N. perurans molecular markers to the wider environment to address questions of population genetics, environmental reservoirs (providing much-needed information on the parasite life cycle, a prelude to in vitro culture which would benefit vaccine development), and parasite dynamics in heavily-farmed and virgin marine environments to address fundamental questions as the Tasmanian salmon industry contemplates a move towards off-shore aquaculture.
This project is a high priority for the Tasmanian salmon industry and was adopted into the CRC at its inception. This PhD project has the support of the industry. The project also has strong alignment with the industry run selective breeding program.

Aquatic Animal Health Subprogram: development of improved molecular diagnostic tests for Perkinsus olseni in Australian molluscs

Project number: 2011-004
Project Status:
Completed
Budget expenditure: $305,561.00
Principal Investigator: Nick Gudkovs
Organisation: CSIRO Australian Animal Health Laboratory
Project start/end date: 21 Sep 2011 - 29 Aug 2014
Contact:
FRDC

Need

Improved diagnostic methods for endemic and exotic pathogens of aquatic animals have been identified as a Key Research Area in the 2009-12 FRDC AAHS R&D plan (6.2.3 Endemic and exotic aquatic animal disease diagnostics).

Since Perkinsus olseni was first described in Australian abalone by Lester and Davies in 1981, histology and culture in Ray’s medium have been the most commonly applied diagnostic procedures for detection of Perkinsus sp.. Although these tests are relatively straight forward and practical, they are general in nature and neither identifies or differentiates specific species of Perkinsus. Despite a well developed framework for the molecular characterization of Perkinsus and modern PCR based molecular tests for some of the more commercially important Perkinsus species, these have rarely been applied in Australia. The first attempts to apply molecular methods to a small number (n=40) of Perkinsus infected abalone from disease outbreaks in NSW have already revealed a new variant which probably represents a new previously unrecognized species in Australia (Reece et al. 2010). This fact and the apparent variation in pathogenicity observed with Perkinsus in different areas, has raised several questions about which Perkinsus sp. are present in commercial mollusc populations.

Given that a significant depletion of blacklip abalone (Haliotis rubra) stocks in NSW over the last 20 years has been attributed to infection with Perkinsus (FRDC Project 2004/084) and localized areas of infection occur in a number of Australian states, from South Australia to northern Western Australia, the development and implementation of highly sensitive and rapid PCR based molecular methods to identify specific species of Perkinsus is essential. The development and application of such tests is necessarily underpinned by a detailed understanding of the molecular makeup of Perkinsus in these populations which is the subject of this application.

Objectives

1. Undertake a targeted molecular, histological and cultural examination of known Perkinsus infected wild abalone populations from NSW, SA and WA to compare existing methods of detection.
2. Establish representative axenic (single species) cultures of Perkinsus sp. from infected abalone.
3. Use established PCRs and DNA sequencing methods to confirm the presence of P. olseni and determine the genetic diversity, including other Perkinsus sp. from these populations.
4. Develop and validate qPCR methods for the detection and identification of P. olseni in infected abalone.
5. Compare and evaluate the performance of the Objective 4 qPCR with existing conventional PCR methods for detection of P. olseni.

Final report

ISBN: 978-1-4863-0691-6
Author: Nick N. Godkovs

SCRC: IB: Study tour of Chile

Project number: 2012-747
Project Status:
Completed
Budget expenditure: $0.00
Principal Investigator: Brad Evans
Organisation: Salmon Enterprises of Tasmania Pty Ltd
Project start/end date: 29 Aug 2012 - 30 Mar 2013
Contact:
FRDC

Final report

ISBN: 978-1-925983-12-8
Author: Brad Evans
Final Report • 2013-03-31 • 139.28 KB
2012-747-DLD-RTG.pdf

Summary

The Tasmanian Atlantic Salmon Selective Breeding Program (SBP) operates in an environment in which there is no current high level threat of viral disease, and as such, the biosecurity level within the industry is generally low when compared to world standards. The Chilean industry has suffered from one of the greatest and most catastrophic viral outbreaks in the history of aquaculture and has since rebuilt with much greater government and industry self-regulation, leading to stringent biosecurity requirements which are monitored and enforced by government, and independent testing laboratories.

The goal of this visit was to determine which areas of biosecurity are essential to protect the Australian industry from biological threats, and how can we most effectively integrate them into our commercial systems in order to avoid the potentially catastrophic results of a viral outbreak within the Tasmanian industry.

SCRC: SCRC RTG 3.12: Micromon recombinant DNA techniques course (Dr James Harris: Students Paula Lima and Celeste Knowles)

Project number: 2009-768
Project Status:
Completed
Budget expenditure: $0.00
Principal Investigator: James O. Harris
Organisation: Flinders University
Project start/end date: 9 Oct 2009 - 29 Dec 2009
Contact:
FRDC

Final report

ISBN: 978-1-925982-18-3
Author: Celeste Knowles
Final Report • 2009-12-30 • 131.15 KB
2009-768-DLD-RTG.pdf

Summary

This research travel grant allowed two PhD students: Paula Lima and Celeste Knowles to travel to Melbourne to undertake the Micromon Recombinant DNA Course conducted by Monash University. This course taught essential techniques and skills which may be used by both students in the course of the PhD studies and throughout their careers.

The Monash Recombinant DNA Techniques Course is widely recognised as the leading course of its type in Australia, which consists of a series of tutorials, lectures and hands on laboratory work.

These students aimed to use the techniques learned to investigate amoebic gill disease in Atlantic Salmon which costs the industry $20-25 million annually. Both students have reported that the techniques learned during the course have been used on a regular basis since returning from Melbourne.

The pearl oyster (Pinctada maxima): a histological atlas of normal and diseased tissues

Project number: 1997-333
Project Status:
Completed
Budget expenditure: $45,000.00
Principal Investigator: Colin C. Shelley
Organisation: Department of Industry Tourism and Trade
Project start/end date: 7 Mar 1998 - 31 Aug 2008
Contact:
FRDC

Need

Pearl production accounts for more than half the value of the combined Australia aquaculture industries, yet little was understood of their health status prior to project no 94/79.

There is no text available which describes, the anatomy and histopathologically of the pearl oyster, Pinctada maxima , or the histopathological changes that occur with disease. This lack of published data is compounded by the fact that there are currently only 4 pathologists in Australia with significant experience and knowledge to interpret histology sections from pearl oysters.

The publication of the histopathology photographs collected during project no 94/79 plus other reference material collected by previous researchers will help to overcome this problem.

The ability to be able to recognise what is normal or abnormal is critical in the interpretation of histology sections and hence will affect the quality of diagnostic services that can be provided to the pearling industry.

The publication of this material will also act as a reference book for a range of other investigations into pearl oysters, such as, nutritional, husbandry and biology studies. It will ensure that the material gathered during project no 94/79 will be preserved for the future benefit of the pearling industry.

Objectives

1. Develop a comprehensive histological photographic database of the normal and diseased tissue of the pearl oyster Pinctada maxima .
2. Compile a computerised atlas showing the basic anatomy of Pinctada maxima with explanatory text and labelled photographs of normal and diseased tissue.
3. Publish this data in a book and/or compact disk format.

Development of sector-specific biosecurity plan templates and guidance documents for the abalone and oyster aquaculture industries

Project number: 2016-245
Project Status:
Completed
Budget expenditure: $59,997.00
Principal Investigator: Shane D. Roberts
Organisation: Department of Primary Industries and Regions South Australia (PIRSA)
Project start/end date: 18 Sep 2016 - 30 Nov 2017
Contact:
FRDC

Need

Although the abalone and oyster industries and relevant jurisdictions have implemented a range of measures to mitigate the risks of major diseases of concern (i.e. AVG, POMS), both industry sectors still lack a nationally consistent, agreed approach to biosecurity.

An industry-wide biosecurity plan is a critical component of health accreditation programs to facilitate safe interjurisdictional and international trade in aquatic animals. Minimum biosecurity standards must meet importing jurisdiction or country requirements, so it is vital that these plans are recognised by state government authorities and implemented by industry. Note that for interstate trade, requirements generally outline that oyster or abalone livestock only be sourced from land-based facilities with high level (auditable) biosecurity.

The abalone industry require movement of broodstock between farms to improve genetic family lines. A national Abalone Health Accreditation Program (developed by SCAAH) provides guidance for land-based abalone farms to demonstrate freedom of AVG for the purpose of trade. Biosecurity and surveillance requirements form the basis of the health accreditation program. A nationally agreed biosecurity plan (guidance document) specific to land-based abalone farms, which identifies specific disease risks and provides recommended systems to mitigate those (and potential emergent) risks, is now required to assist farmers in developing their own farm biosecurity plans.

Similarly, for the oyster industry both biosecurity and surveillance are required to demonstrate freedom of POMS (and mitigation of potential other emergent biosecurity risks). This is particularly important for consideration of movement of hatchery reared spat (juveniles) from areas of known infection to areas not known to be affected by POMS. These two fundamental requirements (biosecurity and surveillance) are outlined in South Australia’s draft import protocols for spat sourced from oyster hatcheries. Nationally agreed guidelines for oyster hatchery biosecurity plans are now required to facilitate trade in oyster spat.

Objectives

1. To develop an industry-endorsed, sector-specific biosecurity plan and relevant guidance documents for the Australian farmed abalone industry (land-based).
2. To develop an industry-endorsed, sector-specific biosecurity plan and relevant guidance documents for the Australian oyster industry (land-based).

Final report

ISBN: 978-1-876007-05-8
Authors: Matthews E. Roberts S. Deveney M. Bradley T. Dang C. Wronski E. Walker M. Savva N. and Zippel B.
Final Report • 2017-11-15 • 4.80 MB
2016-245-DLD.pdf

Summary

This project developed industry endorsed biosecurity plans and guidance documents for the abalone farming industry (land based), and Oyster hatcheries. These documents provide industry with detailed guidance to develop a new, or improve existing, farm biosecurity plans and supporting documentation. Improving biosecurity practices represents a crucial step in ensuring a profitable, secure and resilient aquaculture industry.

Documented (and in some cases auditable) farm biosecurity plans are a common requirement of health accreditation programs and livestock translocation protocols. Consequently, these guidelines will facilitate industry to trade in livestock or as an independent business decision to protect the farm, industry and community from disease incursions. Depending on the enterprise’s individual business needs and cost benefit analysis, a farm may elect to adopt some or all of the best practice biosecurity recommendations outlined in the guidance documents.

Upon Animal Health Committee (AHC) endorsement these documents will become nationally agreed guidelines and form, not only an integral part of health accreditation and translocation protocols to assist in the safe translocation of oysters and abalone, but also a fundamental means of protecting the sectors from disease risks.

This project was led by Primary Industries and Regions South Australia (PIRSA) during late 2016 and 2017 in collaboration with co-investigators from other relevant state jurisdictions as well as industry peak bodies.

Development of sector-specific biosecurity plan templates and guidance documents for the Australian farmed barramundi industry

Project number: 2016-147
Project Status:
Completed
Budget expenditure: $20,000.00
Principal Investigator: Jo-Anne Ruscoe
Organisation: Australian Barramundi Farmers Association (ABFA)
Project start/end date: 13 Jun 2017 - 14 Dec 2017
Contact:
FRDC
SPECIES

Need

Enhanced biosecurity has been identified as a priority area in the ABFA 2015 – 2020 Strategic Plan.

Although the farmed barramundi industry and relevant jurisdictions have implemented a range of measures to mitigate the risks of major diseases of concern (i.e. individual on farm biosecurity procedures and engagement and sponsorship of a number of specific projects), this industry sector does not have a nationally consistent, agreed approach to biosecurity.

The development of a sector-specific national biosecurity plan for the farmed barramundi industry would ensure a common level of biosecurity risk management to support specific enterprise and whole-of industry productivity.

Furthermore, work is underway to develop industry-government emergency aquatic animal disease response arrangements. These arrangements should be underpinned by amongst other measures an industry biosecurity plan.

The industry feel that they are at a high risk to diseases introduction through the importation of fish that require processing from high risk regions that have very potent diseases such as pot belly and scale drop syndrome. As such enhanced Industry biosecurity measures are considered critical to the growth of barramundi farming in Australia.

Objectives

1. To develop an industry-endorsed, sector-specific biosecurity plan and relevant guidance documents for the Australian farmed barramundi industry

Report

ISBN: Not provided
Authors: Matt Landos Chris Calogeras
Report • 2017-12-01 • 1.99 MB
2016-147-DLD.pdf

Summary

As the Australian Barramundi industry continues to expand growing importance needs to be placed on ensuring nationally consistent biosecurity measures are implemented across all enterprises. In 2014, the aquatic animal industries and Commonwealth and State and Territory Governments endorsed Australia’s third national strategic plan for aquatic animal health, AQUAPLAN 2014-2019. AQUAPLAN outlines priorities for enhancing Australia’s management of aquatic animal health.
These guidelines have been developed to assist Australian Barramundi farms with the tools and templates to create basic through to comprehensive, and fully auditable, biosecurity plans.
Final Report • 2019-06-28 • 1.99 MB
2016-147-DLD.pdf

Summary

These guidelines have been developed to assist members of the Australian Barramundi Farmers Association (ABFA) to create fully auditable biosecurity plans. They form a component of AQUAPLAN 2014-2019, and a strategic goal of ABFA to achieve ‘effective management of biosecurity risk’.

These guidelines have been developed to assist barramundi enterprises to:
• develop a farm biosecurity plan (for those with no current plan in place); or
• strengthen an existing farm biosecurity plan.


These guidelines identify the major routes of disease transmission that should be incorporated into a farm biosecurity plan, including disease entry, and spread within and from a Barramundi farm. The
guidelines help assess:
• risks associated with each potential route of disease transmission
• on-farm measures to minimise the risk of disease transmission
• supporting documentation needs, such as standard operating procedures (SOPs), for a comprehensive plan.

SCRC: SCRC RTG: Research training at AAHL, Geelong (Vinh Dang)

Project number: 2010-763
Project Status:
Completed
Budget expenditure: $0.00
Principal Investigator: Peter Speck
Organisation: Flinders University
Project start/end date: 31 Aug 2010 - 31 Oct 2010
Contact:
FRDC

Final report

ISBN: 978-1-925982-84-8
Author: Vinh Dang
Final Report • 2010-11-01 • 179.12 KB
2010-763-DLD-RTG.pdf

Summary

This project allowed Mr Vinh Dang to carry out two research trips in Australian Animal Health Laboratory (AAHL), Geelong, under the joint supervision of Dr Kirsten Benkendorff, Dr Peter Speck and Dr Mark Crane. Both trips lasted for three weeks, the first one in October 2010 and the second one in November 2011.

This provided the opportunity for Mr Dang to work in that high safety standard PC-3 laboratory, where some new techniques were taught (e.g. handling of abalone herpesvirus and other marine viruses, real-time PCR) as well as performed some additional research experiments (e.g. AbHV infection trial, abalone immune response during viral infection, and antiviral assay against marine fish viruses). In The results of these experiments were analysed and written up in manuscript format for publication. In addition, some of the results will be presented at International Abalone Symposium in May 2012 in Hobart.

AAHL Fish Diseases Laboratory bacteriology workshop

Project number: 2000-149
Project Status:
Completed
Budget expenditure: $35,604.99
Principal Investigator: Nick Gudkovs
Organisation: CSIRO Australian Animal Health Laboratory
Project start/end date: 18 Dec 2000 - 30 Dec 2001
Contact:
FRDC

Need

Diagnostic laboratories across the country vary in their diagnostic capability for aquatic animal pathogens. Due to their individual needs, many diagnostic laboratories have developed their own reagents and procedures for the identification of bacterial pathogens. This lack of standardisation can be problematical, for example, when reporting on aquatic animal health status. Using Vibrio identification as an example, it is likely that diagnostic laboratories would be capable of identification to the genus level (i.e. Vibrio sp.). However, due to differences in the various laboratories, identification to the species level would be difficult, and different laboratories are likely to use different procedures for identification.

There is a clear need for diagnostic scientists working in this area to compare and standardise protocols between States. A series of workshops aimed at providing training in the diagnosis of bacterial disease in aquatic animals for those new to the area, and at the same time providing an opportunity to evaluate the various diagnostic protocols used in Australia for their ability to identify both enzootic and exotic pathogens is overdue.

Development of Standard Diagnostic Techniques will require three logical steps:

1. Comparison and evaluation of the tests currently used by diagnostic laboratories;
2. Development of, and agreement on, the most sensitive, accurate and reproducible methods;
3. Adoption and publication of the agreed method for each pathogen as the Standard Diagnostic Technique.

Thus development of SDTs in aquatic animal bacteriology may include an SDT on general methods for aquatic animal bacteriology followed by SDTs for specific diseases such as Vibriosis. Vibriosis, due to its widespread occurence in vertebrate and invertebrate aquatic animal species in tropical and temperate regions of Australia, was identified as a disease of particular importance with respect to standardisation of diagnostic methods [1].

In order to ensure that the SDTs incorporate the latest technologies and information on exotic, as well as enzootic, bacterial pathogens, and that the SDTs will be recognised internationally as state-of-the-art, an international expert on the specific disease will be invited to participate in each of the respective workshops.

References

1. Fish Health Management Committee (1998). Report of the Fish Health Management Committee and the Fish Health Coordinating Group: Workshop on Aquatic Animal Health: Technical Issues, 7-9 December 1998, Melbourne, Victoria.

Objectives

1. Introductory Workshop in Fish Bacteriology - to provide training in basic diagnostic techniques for the major diseases of salmonids and other finfish.
2. Bacteriology Workshop - Diagnosis of Vibriosis in aquatic animals.
3. Preparation and submission of a report recommending bacteriological methods for aquatic animals for inclusion in Australian Standard Diagnostic Techniques (SDTs), and agreement on authorship, provided to the Aquatic Animal Health Unit, National Office of Animal and Plant Health.

Final report

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